Protein Dimension DB - Release 1
Collection
Per-protein PLM embeddings, taxonomy encodings and GO experimental annotations for all SwissProt/Uniprot proteins • 5 items • Updated
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The dataset generation failed
Error code: DatasetGenerationError
Exception: TypeError
Message: Couldn't cast array of type
fixed_size_list<element: double>[1536]
to
Sequence(feature=Value(dtype='float64', id=None), length=768, id=None)
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1387, in compute_config_parquet_and_info_response
fill_builder_info(builder, hf_endpoint=hf_endpoint, hf_token=hf_token, validate=validate)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 573, in fill_builder_info
) = retry_validate_get_features_num_examples_size_and_compression_ratio(
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 492, in retry_validate_get_features_num_examples_size_and_compression_ratio
validate(pf)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 530, in validate
raise TooBigRowGroupsError(
worker.job_runners.config.parquet_and_info.TooBigRowGroupsError: Parquet file has too big row groups. First row group has 1763484626 which exceeds the limit of 300000000
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1855, in _prepare_split_single
for _, table in generator:
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 687, in wrapped
for item in generator(*args, **kwargs):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/parquet/parquet.py", line 106, in _generate_tables
yield f"{file_idx}_{batch_idx}", self._cast_table(pa_table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/parquet/parquet.py", line 73, in _cast_table
pa_table = table_cast(pa_table, self.info.features.arrow_schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2246, in cast_table_to_schema
arrays = [
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2247, in <listcomp>
cast_array_to_feature(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1796, in wrapper
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1796, in <listcomp>
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2109, in cast_array_to_feature
raise TypeError(f"Couldn't cast array of type\n{_short_str(array.type)}\nto\n{_short_str(feature)}")
TypeError: Couldn't cast array of type
fixed_size_list<element: double>[1536]
to
Sequence(feature=Value(dtype='float64', id=None), length=768, id=None)
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1410, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 989, in stream_convert_to_parquet
builder._prepare_split(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1898, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
id large_string | emb sequence |
|---|---|
P0DPR3 | [
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P83570 | [
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P62968 | [
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... |
P62969 | [
-0.01194170955568552,
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0.0014552709180861712,
0.009274088777601719,
0.003113610902801156,
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0.006931181997060776,
0.044955067336559296,
0.008875949308276176,
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... |
P62970 | [
-0.01194170955568552,
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0.006931181997060776,
0.044955067336559296,
0.008875949308276176,
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... |
P62971 | [
-0.01194170955568552,
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0.0014552709180861712,
0.009274088777601719,
0.003113610902801156,
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0.006931181997060776,
0.044955067336559296,
0.008875949308276176,
-0.006495957728475332,
-0.021357908844947815,
-0.01356972474604845,
-0.03336673602461815,
... |
P84761 | [
-0.009095576591789722,
0.029450954869389534,
0.009003407321870327,
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0.06590329855680466,
0.014708868227899075,
0.017367664724588394,
0.010813827626407146,
-0.006087640766054392,
0.017175743356347084,
-0.0369139239192009,
-0... |
C0HLZ5 | [
0.001604642835445702,
0.029216011986136436,
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0.01941552944481373,
0.003059553448110819,
0.023621421307325363,
-0.027037817984819412,
0.006615391466766596,
-0.003190046874806285,
0.02041446976363659,
0.... |
P01858 | [
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0.02650514803826809,
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0.026777703315019608,
0.03247019648551941,
0.025727858766913414,
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-0.018028413876891136,
-0.002236077096313238,
-0.013465161435306072,
... |
P0DPI4 | [
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0.023519307374954224,
0.03038785047829151,
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0.10005798190832138,
0.03745048865675926,
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0.0070348880253732204,
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-... |
P0DUS0 | [
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... |
P19916 | [
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-0.022336924448609352,
-0.006536876317113638,
-0.01625584065914154,
... |
End of preview.
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