chromosome
stringclasses 1
value | start_position
int64 10k
6.9M
| end_position
int64 10.5k
6.9M
| computational_method
stringclasses 1
value | period_size
int64 1
12
| copy_number
float64 2.1
884
| consensus_size
int64 1
14
| percent_matches
int64 61
100
| percent_indels
int64 0
33
| score
int64 50
1.2k
| A
int64 0
100
| C
int64 0
81
| G
int64 0
84
| T
int64 0
100
| entropy_0-2
float64 0
2
| sequence
stringlengths 1
14
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1
| 10,000
| 10,468
|
trf
| 6
| 77.2
| 6
| 95
| 3
| 789
| 33
| 51
| 0
| 15
| 1.43
|
TAACCC
|
chr1
| 30,862
| 30,959
|
trf
| 2
| 47.5
| 2
| 75
| 8
| 79
| 5
| 42
| 1
| 51
| 1.31
|
TC
|
chr1
| 44,835
| 44,876
|
trf
| 4
| 10
| 4
| 94
| 5
| 73
| 73
| 0
| 0
| 26
| 0.84
|
AAAT
|
chr1
| 50,481
| 50,513
|
trf
| 2
| 16
| 2
| 100
| 0
| 64
| 0
| 0
| 50
| 50
| 1
|
GT
|
chr1
| 54,712
| 54,817
|
trf
| 4
| 25.8
| 4
| 87
| 7
| 149
| 0
| 26
| 0
| 72
| 0.91
|
TTTC
|
chr1
| 66,159
| 66,629
|
trf
| 7
| 68.1
| 7
| 72
| 18
| 278
| 49
| 0
| 0
| 49
| 1.08
|
TTATATA
|
chr1
| 66,160
| 66,630
|
trf
| 2
| 262
| 2
| 71
| 21
| 339
| 49
| 0
| 0
| 49
| 1.08
|
TA
|
chr1
| 66,204
| 66,632
|
trf
| 5
| 87.4
| 5
| 73
| 16
| 202
| 50
| 0
| 0
| 48
| 1.06
|
ATATA
|
chr1
| 72,124
| 72,164
|
trf
| 12
| 3.3
| 12
| 89
| 0
| 62
| 50
| 20
| 0
| 30
| 1.49
|
ATATATACATAC
|
chr1
| 72,128
| 72,163
|
trf
| 4
| 8.8
| 4
| 87
| 0
| 52
| 51
| 22
| 0
| 25
| 1.48
|
ATAC
|
chr1
| 83,791
| 84,041
|
trf
| 4
| 64.8
| 4
| 86
| 11
| 335
| 72
| 0
| 28
| 0
| 0.86
|
AAAG
|
chr1
| 98,999
| 99,042
|
trf
| 4
| 10.8
| 4
| 100
| 0
| 86
| 23
| 0
| 0
| 76
| 0.78
|
TTTA
|
chr1
| 99,046
| 99,116
|
trf
| 1
| 70
| 1
| 76
| 0
| 68
| 0
| 11
| 0
| 88
| 0.51
|
T
|
chr1
| 99,047
| 99,115
|
trf
| 12
| 5.9
| 11
| 83
| 16
| 77
| 0
| 11
| 0
| 88
| 0.52
|
TTTTTTTTTTC
|
chr1
| 104,160
| 104,196
|
trf
| 2
| 18
| 2
| 94
| 0
| 63
| 50
| 47
| 0
| 2
| 1.15
|
AC
|
chr1
| 108,444
| 108,469
|
trf
| 11
| 2.3
| 11
| 100
| 0
| 50
| 28
| 16
| 32
| 24
| 1.96
|
GAGGATCACTT
|
chr1
| 109,564
| 109,614
|
trf
| 2
| 25
| 2
| 91
| 0
| 82
| 2
| 2
| 48
| 48
| 1.24
|
TG
|
chr1
| 120,967
| 121,135
|
trf
| 7
| 23.1
| 7
| 77
| 17
| 150
| 41
| 3
| 1
| 53
| 1.29
|
TTATATA
|
chr1
| 120,968
| 121,135
|
trf
| 11
| 15.3
| 11
| 76
| 13
| 159
| 41
| 3
| 1
| 53
| 1.29
|
TATATATTATA
|
chr1
| 120,968
| 121,135
|
trf
| 9
| 17.6
| 9
| 74
| 21
| 137
| 41
| 3
| 1
| 53
| 1.29
|
TATATATTA
|
chr1
| 134,065
| 134,094
|
trf
| 1
| 29
| 1
| 100
| 0
| 58
| 0
| 0
| 0
| 100
| 0
|
T
|
chr1
| 144,527
| 144,576
|
trf
| 2
| 24.5
| 2
| 100
| 0
| 98
| 48
| 0
| 0
| 51
| 1
|
TA
|
chr1
| 147,433
| 147,475
|
trf
| 3
| 14
| 3
| 89
| 0
| 66
| 71
| 28
| 0
| 0
| 0.86
|
CAA
|
chr1
| 158,997
| 159,031
|
trf
| 2
| 17
| 2
| 93
| 0
| 59
| 52
| 47
| 0
| 0
| 1
|
AC
|
chr1
| 162,180
| 162,275
|
trf
| 4
| 23
| 4
| 72
| 10
| 66
| 51
| 0
| 48
| 0
| 1
|
AAGG
|
chr1
| 162,196
| 162,325
|
trf
| 8
| 16.1
| 8
| 76
| 13
| 97
| 45
| 0
| 54
| 0
| 0.99
|
AAGGAGGG
|
chr1
| 162,287
| 162,344
|
trf
| 4
| 14.2
| 4
| 84
| 0
| 69
| 33
| 0
| 66
| 0
| 0.92
|
GAGG
|
chr1
| 174,902
| 174,933
|
trf
| 1
| 31
| 1
| 100
| 0
| 62
| 100
| 0
| 0
| 0
| 0
|
A
|
chr1
| 176,202
| 176,231
|
trf
| 5
| 5.8
| 5
| 100
| 0
| 58
| 82
| 17
| 0
| 0
| 0.66
|
AAAAC
|
chr1
| 180,088
| 180,998
|
trf
| 6
| 146.8
| 6
| 82
| 9
| 899
| 31
| 48
| 1
| 17
| 1.58
|
ACCCTA
|
chr1
| 201,376
| 201,479
|
trf
| 2
| 50.5
| 2
| 79
| 7
| 100
| 4
| 42
| 0
| 52
| 1.22
|
TC
|
chr1
| 271,385
| 271,410
|
trf
| 5
| 5
| 5
| 100
| 0
| 50
| 0
| 20
| 0
| 80
| 0.72
|
CTTTT
|
chr1
| 271,386
| 271,429
|
trf
| 10
| 4.2
| 10
| 83
| 13
| 52
| 0
| 11
| 0
| 88
| 0.52
|
TTTTCTTTTT
|
chr1
| 275,583
| 275,614
|
trf
| 4
| 7.8
| 4
| 100
| 0
| 62
| 22
| 0
| 0
| 77
| 0.77
|
TTTA
|
chr1
| 275,618
| 275,679
|
trf
| 1
| 61
| 1
| 73
| 0
| 50
| 0
| 13
| 0
| 86
| 0.56
|
T
|
chr1
| 275,619
| 275,677
|
trf
| 12
| 4.9
| 11
| 80
| 19
| 64
| 0
| 13
| 0
| 86
| 0.58
|
TTTTTTTTTTC
|
chr1
| 280,726
| 280,760
|
trf
| 2
| 17
| 2
| 93
| 0
| 59
| 50
| 47
| 0
| 2
| 1.16
|
AC
|
chr1
| 285,008
| 285,033
|
trf
| 11
| 2.3
| 11
| 100
| 0
| 50
| 28
| 16
| 32
| 24
| 1.96
|
GAGGATCACTT
|
chr1
| 286,134
| 286,178
|
trf
| 2
| 22
| 2
| 85
| 0
| 61
| 4
| 2
| 45
| 47
| 1.35
|
TG
|
chr1
| 297,538
| 297,674
|
trf
| 2
| 76.5
| 2
| 68
| 22
| 90
| 41
| 3
| 1
| 52
| 1.28
|
TA
|
chr1
| 297,546
| 297,674
|
trf
| 7
| 17.4
| 7
| 75
| 16
| 109
| 42
| 3
| 1
| 53
| 1.26
|
TATTATA
|
chr1
| 360,788
| 360,816
|
trf
| 12
| 2.3
| 12
| 100
| 0
| 56
| 28
| 25
| 21
| 25
| 1.99
|
ATCAGCCTGGTA
|
chr1
| 367,998
| 368,050
|
trf
| 10
| 4.6
| 11
| 77
| 17
| 54
| 44
| 38
| 1
| 15
| 1.58
|
TACACACATCA
|
chr1
| 370,612
| 370,656
|
trf
| 4
| 9.8
| 5
| 88
| 11
| 53
| 0
| 15
| 0
| 84
| 0.63
|
TTTTC
|
chr1
| 370,612
| 370,656
|
trf
| 9
| 4.4
| 9
| 79
| 20
| 52
| 0
| 15
| 0
| 84
| 0.63
|
TTTTCTTTT
|
chr1
| 371,008
| 371,037
|
trf
| 5
| 5.8
| 5
| 100
| 0
| 58
| 0
| 0
| 17
| 82
| 0.66
|
TTTTG
|
chr1
| 371,274
| 371,314
|
trf
| 2
| 20
| 2
| 84
| 0
| 53
| 5
| 2
| 45
| 47
| 1.38
|
TG
|
chr1
| 373,984
| 374,164
|
trf
| 12
| 14.8
| 12
| 71
| 9
| 105
| 4
| 57
| 0
| 37
| 1.23
|
TCTCCTTTCTCC
|
chr1
| 393,781
| 393,807
|
trf
| 2
| 13
| 2
| 100
| 0
| 52
| 0
| 0
| 50
| 50
| 1
|
GT
|
chr1
| 394,541
| 394,646
|
trf
| 4
| 26.2
| 4
| 84
| 0
| 75
| 37
| 2
| 60
| 0
| 1.12
|
AGGG
|
chr1
| 396,748
| 396,776
|
trf
| 1
| 28
| 1
| 100
| 0
| 56
| 0
| 0
| 0
| 100
| 0
|
T
|
chr1
| 396,901
| 396,941
|
trf
| 2
| 20
| 2
| 100
| 0
| 80
| 0
| 0
| 50
| 50
| 1
|
GT
|
chr1
| 409,436
| 409,471
|
trf
| 4
| 8.8
| 4
| 87
| 0
| 52
| 22
| 2
| 2
| 71
| 1.13
|
TTTA
|
chr1
| 409,468
| 409,510
|
trf
| 12
| 3.4
| 12
| 81
| 15
| 50
| 0
| 19
| 0
| 80
| 0.7
|
TTTTTCCTTCTT
|
chr1
| 414,629
| 414,675
|
trf
| 2
| 23
| 2
| 100
| 0
| 92
| 50
| 50
| 0
| 0
| 1
|
AC
|
chr1
| 417,892
| 418,051
|
trf
| 4
| 39.2
| 4
| 85
| 12
| 218
| 72
| 0
| 27
| 0
| 0.84
|
AGAA
|
chr1
| 432,155
| 432,300
|
trf
| 2
| 73.5
| 2
| 74
| 5
| 80
| 47
| 10
| 3
| 38
| 1.55
|
AT
|
chr1
| 432,159
| 432,302
|
trf
| 10
| 14.1
| 10
| 75
| 11
| 94
| 47
| 11
| 3
| 37
| 1.56
|
ATATATATAC
|
chr1
| 476,980
| 477,150
|
trf
| 7
| 23.1
| 7
| 76
| 18
| 136
| 41
| 3
| 1
| 53
| 1.25
|
TTATATA
|
chr1
| 490,052
| 490,077
|
trf
| 1
| 25
| 1
| 100
| 0
| 50
| 0
| 0
| 0
| 100
| 0
|
T
|
chr1
| 503,138
| 503,172
|
trf
| 2
| 17
| 2
| 100
| 0
| 68
| 50
| 0
| 0
| 50
| 1
|
TA
|
chr1
| 506,032
| 506,073
|
trf
| 3
| 13.7
| 3
| 84
| 0
| 55
| 73
| 24
| 0
| 2
| 0.96
|
AAC
|
chr1
| 517,589
| 517,629
|
trf
| 2
| 20
| 2
| 94
| 0
| 71
| 52
| 47
| 0
| 0
| 1
|
AC
|
chr1
| 520,776
| 520,871
|
trf
| 4
| 23
| 4
| 72
| 10
| 66
| 51
| 0
| 48
| 0
| 1
|
AAGG
|
chr1
| 520,792
| 520,921
|
trf
| 8
| 16.1
| 8
| 76
| 13
| 97
| 45
| 0
| 54
| 0
| 0.99
|
AAGGAGGG
|
chr1
| 520,883
| 520,940
|
trf
| 4
| 14.2
| 4
| 84
| 0
| 69
| 33
| 0
| 66
| 0
| 0.92
|
GAGG
|
chr1
| 533,492
| 533,520
|
trf
| 1
| 28
| 1
| 100
| 0
| 56
| 100
| 0
| 0
| 0
| 0
|
A
|
chr1
| 534,789
| 534,818
|
trf
| 5
| 5.8
| 5
| 100
| 0
| 58
| 82
| 17
| 0
| 0
| 0.66
|
AAAAC
|
chr1
| 597,051
| 597,101
|
trf
| 10
| 5
| 10
| 80
| 0
| 64
| 44
| 38
| 2
| 16
| 1.59
|
TACACACTCA
|
chr1
| 599,287
| 599,327
|
trf
| 5
| 8.8
| 5
| 89
| 10
| 52
| 0
| 17
| 0
| 82
| 0.67
|
TTTTC
|
chr1
| 599,287
| 599,330
|
trf
| 9
| 4.3
| 9
| 78
| 21
| 50
| 0
| 16
| 0
| 83
| 0.64
|
TTTTCTTTT
|
chr1
| 599,682
| 599,711
|
trf
| 5
| 5.8
| 5
| 100
| 0
| 58
| 0
| 0
| 17
| 82
| 0.66
|
TTTTG
|
chr1
| 599,948
| 599,988
|
trf
| 2
| 20
| 2
| 84
| 0
| 53
| 5
| 2
| 45
| 47
| 1.38
|
TG
|
chr1
| 602,209
| 602,359
|
trf
| 12
| 12.5
| 12
| 77
| 2
| 158
| 5
| 60
| 0
| 33
| 1.24
|
CTCTCCATCCCC
|
chr1
| 623,671
| 623,699
|
trf
| 2
| 14
| 2
| 100
| 0
| 56
| 0
| 0
| 50
| 50
| 1
|
GT
|
chr1
| 624,433
| 624,534
|
trf
| 4
| 25.2
| 4
| 83
| 0
| 67
| 37
| 2
| 59
| 0
| 1.13
|
AGGG
|
chr1
| 626,781
| 626,821
|
trf
| 2
| 20
| 2
| 100
| 0
| 80
| 0
| 0
| 50
| 50
| 1
|
GT
|
chr1
| 645,187
| 645,222
|
trf
| 4
| 8.8
| 4
| 87
| 0
| 52
| 22
| 2
| 2
| 71
| 1.13
|
TTTA
|
chr1
| 645,219
| 645,261
|
trf
| 12
| 3.4
| 12
| 81
| 15
| 50
| 0
| 19
| 0
| 80
| 0.7
|
TTTTTCCTTCTT
|
chr1
| 650,383
| 650,423
|
trf
| 2
| 20
| 2
| 100
| 0
| 80
| 50
| 50
| 0
| 0
| 1
|
AC
|
chr1
| 653,639
| 653,790
|
trf
| 4
| 38.2
| 4
| 84
| 12
| 206
| 72
| 0
| 27
| 0
| 0.84
|
AGAA
|
chr1
| 667,897
| 668,052
|
trf
| 12
| 12.2
| 12
| 76
| 12
| 107
| 47
| 10
| 3
| 38
| 1.54
|
ATATACATATAT
|
chr1
| 667,897
| 668,052
|
trf
| 2
| 78.5
| 2
| 74
| 5
| 91
| 47
| 10
| 3
| 38
| 1.54
|
AT
|
chr1
| 667,899
| 668,054
|
trf
| 10
| 15.1
| 10
| 74
| 12
| 109
| 47
| 10
| 3
| 38
| 1.55
|
ATATATATAC
|
chr1
| 711,957
| 712,094
|
trf
| 7
| 19.1
| 7
| 75
| 19
| 115
| 40
| 3
| 1
| 54
| 1.27
|
TTATATA
|
chr1
| 711,958
| 712,094
|
trf
| 2
| 75.5
| 2
| 71
| 20
| 104
| 41
| 3
| 1
| 53
| 1.27
|
TA
|
chr1
| 711,962
| 712,095
|
trf
| 11
| 12
| 11
| 78
| 13
| 130
| 40
| 4
| 1
| 53
| 1.3
|
TATTATATATC
|
chr1
| 725,051
| 725,080
|
trf
| 1
| 29
| 1
| 100
| 0
| 58
| 0
| 0
| 0
| 100
| 0
|
T
|
chr1
| 747,743
| 747,784
|
trf
| 3
| 13.7
| 3
| 84
| 0
| 55
| 73
| 24
| 0
| 2
| 0.96
|
AAC
|
chr1
| 759,446
| 759,498
|
trf
| 2
| 26
| 2
| 96
| 0
| 95
| 51
| 48
| 0
| 0
| 1
|
AC
|
chr1
| 762,644
| 762,739
|
trf
| 4
| 23
| 4
| 75
| 10
| 75
| 52
| 0
| 47
| 0
| 1
|
AAGG
|
chr1
| 762,660
| 762,809
|
trf
| 8
| 18.5
| 8
| 76
| 12
| 110
| 44
| 0
| 55
| 0
| 0.99
|
AAGGAGGG
|
chr1
| 762,751
| 762,804
|
trf
| 4
| 13.2
| 4
| 83
| 0
| 70
| 32
| 0
| 67
| 0
| 0.91
|
GAGG
|
chr1
| 776,604
| 776,633
|
trf
| 5
| 5.8
| 5
| 100
| 0
| 58
| 82
| 17
| 0
| 0
| 0.66
|
AAAAC
|
chr1
| 788,368
| 788,435
|
trf
| 2
| 34.5
| 2
| 72
| 14
| 52
| 47
| 2
| 47
| 1
| 1.26
|
AG
|
chr1
| 791,052
| 791,098
|
trf
| 5
| 8.5
| 6
| 86
| 13
| 57
| 30
| 0
| 54
| 15
| 1.41
|
GGAATG
|
chr1
| 808,289
| 808,338
|
trf
| 7
| 6.4
| 8
| 80
| 15
| 59
| 51
| 38
| 0
| 10
| 1.36
|
ACATACAC
|
chr1
| 832,736
| 832,781
|
trf
| 5
| 9
| 5
| 100
| 0
| 90
| 0
| 0
| 20
| 80
| 0.72
|
GTTTT
|
chr1
| 860,178
| 860,211
|
trf
| 1
| 33
| 1
| 100
| 0
| 66
| 0
| 0
| 0
| 100
| 0
|
T
|
chr1
| 861,778
| 862,160
|
trf
| 11
| 35.5
| 11
| 72
| 14
| 178
| 37
| 1
| 32
| 28
| 1.64
|
ATAGATGATAG
|
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