Datasets:

OnDeviceMedNotes
/

health-canada-drug-products-database

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Tags:

medical

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The dataset generation failed because of a cast error

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'pharmaceutical_form_name', 'pharmaceutical_form_code'}) and 5 missing columns ({'strength', 'strength_unit', 'dosage_value', 'ingredient_name', 'dosage_unit'}).

This happened while the json dataset builder was generating data using

hf://datasets/OnDeviceMedNotes/health-canada-drug-products-database/Canada-Dosage-Form-English.json (at revision 6a73348a68bbd9650604f63a0671a49e48ba8ce1)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 644, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              drug_code: int64
              pharmaceutical_form_code: int64
              pharmaceutical_form_name: string
              -- schema metadata --
              pandas: '{"index_columns": [], "column_indexes": [], "columns": [{"name":' + 510
              to
              {'dosage_unit': Value('string'), 'dosage_value': Value('string'), 'drug_code': Value('int64'), 'ingredient_name': Value('string'), 'strength': Value('string'), 'strength_unit': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1456, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1055, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 894, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 970, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'pharmaceutical_form_name', 'pharmaceutical_form_code'}) and 5 missing columns ({'strength', 'strength_unit', 'dosage_value', 'ingredient_name', 'dosage_unit'}).
              
              This happened while the json dataset builder was generating data using
              
              hf://datasets/OnDeviceMedNotes/health-canada-drug-products-database/Canada-Dosage-Form-English.json (at revision 6a73348a68bbd9650604f63a0671a49e48ba8ce1)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

dosage_unit string	dosage_value string	drug_code int64	ingredient_name string	strength string	strength_unit string
VIAL		43,080	CEFTAZIDIME (CEFTAZIDIME PENTAHYDRATE)	1	G
VIAL		43,081	CEFTAZIDIME (CEFTAZIDIME PENTAHYDRATE)	2	G
VIAL		43,082	CEFTAZIDIME (CEFTAZIDIME PENTAHYDRATE)	6	G
SRT		43,053	NIFEDIPINE	10	MG
SRT		43,054	NIFEDIPINE	20	MG
ML		43,056	HALOPERIDOL DECANOATE	50	MG
ML		43,057	HALOPERIDOL DECANOATE	100	MG
ML		43,058	FLUPHENAZINE DECANOATE	25	MG
ML		43,059	FLUPHENAZINE DECANOATE	100	MG
		43,060	DESIPRAMINE HYDROCHLORIDE	100	MG
		43,061	DESIPRAMINE HYDROCHLORIDE	150	MG
		43,063	AZITHROMYCIN	250	MG
		43,064	MEDROXYPROGESTERONE ACETATE	2.5	MG
		43,065	MEDROXYPROGESTERONE ACETATE	5	MG
		43,066	MEDROXYPROGESTERONE ACETATE	10	MG
ML	20	43,041	DOBUTAMINE (DOBUTAMINE HYDROCHLORIDE)	250	MG
TAB		43,046	KETOPROFEN	200	MG
		43,021	BUSPIRONE HYDROCHLORIDE	5	MG
		43,029	CHLORHEXIDINE GLUCONATE	0.12	%
ML		43,030	OXYTETRACYCLINE HYDROCHLORIDE	100	MG
ML		43,033	CIMETIDINE (CIMETIDINE HYDROCHLORIDE)	150	MG
		43,034	LEVOBUNOLOL HYDROCHLORIDE	0.5	%
		43,034	DIPIVEFRIN HYDROCHLORIDE	0.1	%
%		42,627	OCTINOXATE	7.5	%
%		42,627	ZINC OXIDE	3	%
%		42,627	OXYBENZONE	2	%
		42,628	HYDROQUINONE	2	%
		42,629	POLYAMINOPROPYL BIGUANIDE	0.0005	%
		42,629	CHLORHEXIDINE GLUCONATE	0.003	%
		42,629	EDETIC ACID	0.05	%
EVT		42,652	ACETYLSALICYLIC ACID	325	MG
LOZ		42,645	MENTHOL	3.28	MG
		42,630	OCTINOXATE	7.5	%
		42,630	OXYBENZONE	6	%
		42,630	HOMOSALATE	5	%
		42,631	PADIMATE O	8	%
		42,631	OCTINOXATE	7.5	%
		42,631	OXYBENZONE	6	%
		42,631	HOMOSALATE	5	%
%		42,632	SALICYLIC ACID	2	%
		42,635	HYDROQUINONE	2	%
		42,636	HYDROQUINONE	2	%
		42,637	HYDROQUINONE	2	%
		42,638	HYDROQUINONE	2	%
		42,639	HYDROQUINONE	2	%
		42,640	HYDROQUINONE	2	%
%		42,641	SALICYLIC ACID	2	%
		42,642	TETRAHYDROZOLINE HYDROCHLORIDE	0.05	%
		42,642	POLYETHYLENE GLYCOL 400	1	%
		42,643	OXYMETAZOLINE HYDROCHLORIDE	0.025	%
%		42,644	PYRITHIONE ZINC	1	%
		42,630	PADIMATE O	8	%
%		42,624	ALUMINUM ZIRCONIUM TRICHLOROHYDREX GLYCINE	20	%
		42,625	BENZYL ALCOHOL	10	%
		42,625	PRAMOXINE HYDROCHLORIDE	1	%
ML	100	44,068	THREONINE	340	MG
ML	100	44,068	TRYPTOPHAN	130	MG
ML	100	44,068	VALINE	560	MG
ML	100	44,068	ALANINE	600	MG
ML	100	44,068	ARGININE	810	MG
ML	100	44,068	HISTIDINE	240	MG
ML	100	44,068	PROLINE	950	MG
ML	100	44,068	SERINE	500	MG
ML	100	44,068	GLYCINE	1.19	G
ML	100	44,068	L-CYSTEINE (L-CYSTEINE HYDROCHLORIDE)	13.9	MG
ML		44,069	METHOTREXATE (METHOTREXATE SODIUM)	25	MG
ML		43,846	CARBOPLATIN	10	MG
		43,827	OMEPRAZOLE	10	MG
		43,830	KETOCONAZOLE	200	MG
		43,831	SELEGILINE HYDROCHLORIDE	5	MG
%		42,412	ALUMINUM ZIRCONIUM TETRACHLOROHYDREX GLY	22	%
%		42,413	LANOLIN	3	%
%		42,413	MINERAL OIL	91.7	%
TAB		42,414	CALCIUM (CALCIUM CARBONATE)	300	MG
TAB		42,414	MAGNESIUM (MAGNESIUM HYDROXIDE)	26	MG
%		42,415	LANOLIN	.6	%
%		42,415	MINERAL OIL	15.9	%
		42,407	OCTINOXATE	2	%
%		42,399	ZINC OXIDE	15	%
%		42,402	ALCOHOL ANHYDROUS	23	%
%		42,402	SALICYLIC ACID	.5	%
%		42,403	CAMPHOR	4.7	%
%		42,403	MENTHOL	2.6	%
%		42,403	EUCALYPTUS OIL	1.3	%
TAB		42,404	CALCIUM CARBONATE	500	MG
TAB		42,404	DIMETHICONE	20	MG
%		42,405	OCTINOXATE	7.5	%
%		42,405	OCTOCRYLENE	7	%
%		42,405	OXYBENZONE	6	%
%		42,405	OCTISALATE	5	%
%		42,405	TITANIUM DIOXIDE	3.4	%
%		42,406	OCTINOXATE	7.5	%
%		42,406	OCTOCRYLENE	7	%
%		42,406	OXYBENZONE	6	%
%		42,406	OCTISALATE	5	%
%		42,406	TITANIUM DIOXIDE	3.4	%
%		42,383	SALICYLIC ACID	40	%
%		42,384	ALCOHOL ANHYDROUS	48.5	%
%		42,384	SALICYLIC ACID	2	%
ML		43,006	IRON (IRON DEXTRAN COMPLEX)	50	MG

End of preview.

#Public Health Canada ##Drug Products Database Dump

This is publicly accessible open data uploaded here for easy of use.

Files can also directly be downloaded from here: https://health-products.canada.ca/api/drug/

Updated as of January 5 2025

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