Christina Theodoris's picture

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Christina Theodoris

ctheodoris

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Recent Activity

new activity 2 days ago

ctheodoris/Geneformer:Genecorpus 30 M annotation

new activity 8 days ago

ctheodoris/Geneformer:GPU requirements

new activity 15 days ago

ctheodoris/Geneformer:Considerations on Gene symbol and Ensembl ID mapping

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New activity in ctheodoris/Geneformer 2 days ago

Genecorpus 30 M annotation

#578 opened 3 days ago by

New activity in ctheodoris/Geneformer 8 days ago

GPU requirements

#577 opened 8 days ago by

New activity in ctheodoris/Geneformer 15 days ago

Considerations on Gene symbol and Ensembl ID mapping

#576 opened 16 days ago by

New activity in ctheodoris/Geneformer 28 days ago

Ensembl gene ID version used in Geneformer (ENSG)

#575 opened 28 days ago by

New activity in ctheodoris/Geneformer about 1 month ago

use geneformer for mouse data

#574 opened about 1 month ago by

New activity in ctheodoris/Geneformer about 2 months ago

Clarification on label mapping for cardiomyopathy classifier (nf, dcm, hcm)

#571 opened about 2 months ago by

New activity in ctheodoris/Genecorpus-30M about 2 months ago

median computation

#26 opened 12 months ago by

New activity in ctheodoris/Geneformer about 2 months ago

problem with get_train_sampler()

#572 opened about 2 months ago by

problem when running gene_classification.ipynb

#573 opened about 2 months ago by

New activity in ctheodoris/Geneformer 2 months ago

Genecorpus-95M availability

#526 opened 9 months ago by

Clarification on tuning "frozen layers" hyperparameter with RayTune

#570 opened 2 months ago by

TypeError in classifier.py

#568 opened 3 months ago by

Fix TypeError in make_perturbation_batch_special

#567 opened 3 months ago by

New activity in ctheodoris/Geneformer 3 months ago

Embedding bulk RNA-seq

#569 opened 3 months ago by

Finetuning vs Pretraining Speed

#566 opened 3 months ago by

Bug in tokenizer.py: tokenize_loom

#565 opened 4 months ago by

New activity in ctheodoris/Geneformer 4 months ago

Setting max_ncells=None in EmbExtractor causes TypeError

#564 opened 4 months ago by

tokenizer zarr integration

#561 opened 5 months ago by

Fine tuning questions

#462 opened about 1 year ago by

ZYSK-huggingface

New activity in ctheodoris/Geneformer 5 months ago

Guidance on speeding up Geneformer ISP on CPU

#563 opened 5 months ago by