Daily Papers

Bioacoustics and ethology encompass a wide range of audio understanding tasks, many of which stand to benefit from recent advances in large audio-language models. However, progress in the field has so far been assessed on a narrow set of tasks, primarily centered on label-centric biological category recognition, such as species and call-type classification. In this work, we introduce BEANS-Next, a benchmark grounded in a taxonomy of bioacoustics tasks spanning acoustic perception, biological category recognition, scene understanding, and in-context learning. Using BEANS-Next, we show that existing models exhibit limited performance beyond the task families emphasized by existing evaluations, constraining their usefulness for broader bioacoustic applications. To support progress on this broader task space, we also introduce ROOTS, a large-scale training resource built from expanded curated real-world data and previously underused behavioral and acoustic metadata, supplemented by audio-derived information and scalable synthetic generation where labeling is insufficient. We demonstrate that training on this dataset yields substantial progress across all task groups of BEANS-Next, moving audio-language models closer to their potential as general-purpose assistants for bioacoustics and ethology. To accelerate progress in the field, we open-source our benchmark, dataset, and data pipelines.

Deep learning (DL) models have emerged as a powerful tool in avian bioacoustics to diagnose environmental health and biodiversity. However, inconsistencies in research pose notable challenges hindering progress in this domain. Reliable DL models need to analyze bird calls flexibly across various species and environments to fully harness the potential of bioacoustics in a cost-effective passive acoustic monitoring scenario. Data fragmentation and opacity across studies complicate a comprehensive evaluation of general model performance. To overcome these challenges, we present the BirdSet benchmark, a unified framework consolidating research efforts with a holistic approach for classifying bird vocalizations in avian bioacoustics. BirdSet harmonizes open-source bird recordings into a curated dataset collection. This unified approach provides an in-depth understanding of model performance and identifies potential shortcomings across different tasks. By establishing baseline results of current models, BirdSet aims to facilitate comparability, guide subsequent data collection, and increase accessibility for newcomers to avian bioacoustics.

Large language models (LLMs) prompted with text and audio represent the state of the art in various auditory tasks, including speech, music, and general audio, showing emergent abilities on unseen tasks. However, these capabilities have yet to be fully demonstrated in bioacoustics tasks, such as detecting animal vocalizations in large recordings, classifying rare and endangered species, and labeling context and behavior - tasks that are crucial for conservation, biodiversity monitoring, and the study of animal behavior. In this work, we present NatureLM-audio, the first audio-language foundation model specifically designed for bioacoustics. Our carefully curated training dataset comprises text-audio pairs spanning a diverse range of bioacoustics, speech, and music data, designed to address the challenges posed by limited annotated datasets in the field. We demonstrate successful transfer of learned representations from music and speech to bioacoustics, and our model shows promising generalization to unseen taxa and tasks. Importantly, we test NatureLM-audio on a novel benchmark (BEANS-Zero) and it sets the new state of the art (SotA) on several bioacoustics tasks, including zero-shot classification of unseen species. To advance bioacoustics research, we also open-source the code for generating training and benchmark data, as well as for training the model.

Perch is a performant pre-trained model for bioacoustics. It was trained in supervised fashion, providing both off-the-shelf classification scores for thousands of vocalizing species as well as strong embeddings for transfer learning. In this new release, Perch 2.0, we expand from training exclusively on avian species to a large multi-taxa dataset. The model is trained with self-distillation using a prototype-learning classifier as well as a new source-prediction training criterion. Perch 2.0 obtains state-of-the-art performance on the BirdSet and BEANS benchmarks. It also outperforms specialized marine models on marine transfer learning tasks, despite having almost no marine training data. We present hypotheses as to why fine-grained species classification is a particularly robust pre-training task for bioacoustics.

Machine learning has the potential to revolutionize passive acoustic monitoring (PAM) for ecological assessments. However, high annotation and compute costs limit the field's efficacy. Generalizable pretrained networks can overcome these costs, but high-quality pretraining requires vast annotated libraries, limiting its current applicability primarily to bird taxa. Here, we identify the optimum pretraining strategy for a data-deficient domain using coral reef bioacoustics. We assemble ReefSet, a large annotated library of reef sounds, though modest compared to bird libraries at 2% of the sample count. Through testing few-shot transfer learning performance, we observe that pretraining on bird audio provides notably superior generalizability compared to pretraining on ReefSet or unrelated audio alone. However, our key findings show that cross-domain mixing which leverages bird, reef and unrelated audio during pretraining maximizes reef generalizability. SurfPerch, our pretrained network, provides a strong foundation for automated analysis of marine PAM data with minimal annotation and compute costs.

Bioacoustic foundation models rely on large-scale citizen science platforms like Xeno-Canto for geographically and ecologically diverse data. Recent work has shown that supervision alone can produce SotA species detection models when trained on this large-scale data -- however, there remains unutilized potential in the form of recording metadata readily available within these community-driven data hubs. In this work, we explore the use of metadata -- such as location and time -- as auxiliary supervision signals, allowing the model to leverage species-metadata correlations in its learned representation. Auxiliary metadata losses provide additional information beyond vocalizations alone that can encourage a richer, more robust representation that generalizes better to species distribution and acoustic domain shifts -- important challenges for deployment in real-world passive acoustic monitoring (PAM) settings. We introduce MetaPerch, a new foundation model that achieves strong species identification performance across multiple challenging domains and present an extensive empirical study of the effects of 9 diverse metadata sources on 17 bioacoustic datasets.

The ability for a machine learning model to cope with differences in training and deployment conditions--e.g. in the presence of distribution shift or the generalization to new classes altogether--is crucial for real-world use cases. However, most empirical work in this area has focused on the image domain with artificial benchmarks constructed to measure individual aspects of generalization. We present BIRB, a complex benchmark centered on the retrieval of bird vocalizations from passively-recorded datasets given focal recordings from a large citizen science corpus available for training. We propose a baseline system for this collection of tasks using representation learning and a nearest-centroid search. Our thorough empirical evaluation and analysis surfaces open research directions, suggesting that BIRB fills the need for a more realistic and complex benchmark to drive progress on robustness to distribution shifts and generalization of ML models.

Self-supervised learning (SSL) foundation models have emerged as powerful, domain-agnostic, general-purpose feature extractors applicable to a wide range of tasks. Such models pre-trained on human speech have demonstrated high transferability for bioacoustic processing. This paper investigates (i) whether SSL models pre-trained directly on animal vocalizations offer a significant advantage over those pre-trained on speech, and (ii) whether fine-tuning speech-pretrained models on automatic speech recognition (ASR) tasks can enhance bioacoustic classification. We conduct a comparative analysis using three diverse bioacoustic datasets and two different bioacoustic tasks. Results indicate that pre-training on bioacoustic data provides only marginal improvements over speech-pretrained models, with comparable performance in most scenarios. Fine-tuning on ASR tasks yields mixed outcomes, suggesting that the general-purpose representations learned during SSL pre-training are already well-suited for bioacoustic tasks. These findings highlight the robustness of speech-pretrained SSL models for bioacoustics and imply that extensive fine-tuning may not be necessary for optimal performance.

Bioacoustics, the study of sounds produced by living organisms, plays a vital role in conservation, biodiversity monitoring, and behavioral studies. Many tasks in this field, such as species, individual, and behavior classification and detection, are well-suited to machine learning. However, they often suffer from limited annotated data, highlighting the need for a general-purpose bioacoustic encoder capable of extracting useful representations for diverse downstream tasks. Such encoders have been proposed before, but are often limited in scope due to a focus on a narrow range of species (typically birds), and a reliance on a single model architecture or training paradigm. Moreover, they are usually evaluated on a small set of tasks and datasets. In this work, we present a large-scale empirical study that covers aspects of bioacoustics that are relevant to research but have previously been scarcely considered: training data diversity and scale, model architectures and training recipes, and the breadth of evaluation tasks and datasets. We obtain encoders that are state-of-the-art on the existing and proposed benchmarks. We also identify what matters for training these encoders, such that this work can be extended when more data are available or better architectures are proposed. Specifically, across 26 datasets with tasks including species classification, detection, individual ID, and vocal repertoire discovery, we find self-supervised pre-training followed by supervised post-training on a mixed bioacoustics + general-audio corpus yields the strongest in- and out-of-distribution performance. We show the importance of data diversity in both stages. To support ongoing research and application, we will release the model checkpoints.

Training data for bioacoustics is scattered across taxa, regions, and institutions. Centralizing it all is often infeasible. We show that independently fine-tuned BEATs encoders can be composed into a unified 661-species classifier via task vector arithmetic without sharing data. We find that bioacoustic task vectors are near-orthogonal (cosine 0.01-0.09). Their separation aligns closely with spectral distribution distance, a gradient consistent with the acoustic niche hypothesis. This geometry makes simple averaging optimal while sign-conflict methods reduce accuracy by one to six percentage points. Composition also creates an asymmetric gap: species-rich groups lose accuracy relative to joint training while underrepresented taxa gain, a redistribution useful for equitable biodiversity monitoring. We verify linear mode connectivity across all taxonomic pairs, demonstrate zero-shot transfer to new regions, and identify domain negation as a boundary condition where composition fails. These results enable a collaborative paradigm for bioacoustics where institutions share only task vectors to assemble multi-taxa classifiers, preserving data privacy.

Recent advances in bioacoustics have been driven by large-scale corpora and standardized benchmarks, yet existing resources are overwhelmingly bird-centric and shallow per species, limiting their use for studying the structure of a single species' communication system. This gap is particularly acute for cetaceans: despite bottlenose dolphins (Tursiops truncatus) being a compelling case of complex vocal communication among non-human mammals, existing dolphin datasets are small, fragmented, and largely closed. We introduce OpenWhistle, the largest publicly available dataset of dolphin vocalizations. It comprises approximately 180,000 whistles (114 hours) recorded over five years from a stable pod of five individuals in a semi-natural environment, paired with a curated subset of 8,354 expert-annotated whistles and reproducible evaluation protocols for whistle-type detection and classification. We further release the full processing pipeline for whistle detection, segmentation, and categorization. To demonstrate its utility, we pretrain a Wav2Vec2.0 model adapted to dolphin acoustics on the OpenWhistle corpus and show that it learns effective representations, outperforming general-purpose bioacoustic models such as AVES and BioLingual on both tasks while leaving meaningful headroom for future work. By releasing the dataset, pipeline, and evaluation protocol, we provide the first open dolphin whistle dataset tailored for training self-supervised models, laying the groundwork for advancing dolphin communication research and developing models that capture fine-grained acoustic structure within species.

The lack of annotated training data in bioacoustics hinders the use of large-scale neural network models trained in a supervised way. In order to leverage a large amount of unannotated audio data, we propose AVES (Animal Vocalization Encoder based on Self-Supervision), a self-supervised, transformer-based audio representation model for encoding animal vocalizations. We pretrain AVES on a diverse set of unannotated audio datasets and fine-tune them for downstream bioacoustics tasks. Comprehensive experiments with a suite of classification and detection tasks have shown that AVES outperforms all the strong baselines and even the supervised "topline" models trained on annotated audio classification datasets. The results also suggest that curating a small training subset related to downstream tasks is an efficient way to train high-quality audio representation models. We open-source our models at https://github.com/earthspecies/aves.

We present Task 5 of the DCASE 2025 Challenge: an Audio Question Answering (AQA) benchmark spanning multiple domains of sound understanding. This task defines three QA subsets (Bioacoustics, Temporal Soundscapes, and Complex QA) to test audio-language models on interactive question-answering over diverse acoustic scenes. We describe the dataset composition (from marine mammal calls to soundscapes and complex real-world clips), the evaluation protocol (top-1 accuracy with answer-shuffling robustness), and baseline systems (Qwen2-Audio-7B, AudioFlamingo 2, Gemini-2-Flash). Preliminary results on the development set are compared, showing strong variation across models and subsets. This challenge aims to advance the audio understanding and reasoning capabilities of audio-language models toward human-level acuity, which are crucial for enabling AI agents to perceive and interact about the world effectively.

Source-free domain adaptation (SFDA) is compelling because it allows adapting an off-the-shelf model to a new domain using only unlabelled data. In this work, we apply existing SFDA techniques to a challenging set of naturally-occurring distribution shifts in bioacoustics, which are very different from the ones commonly studied in computer vision. We find existing methods perform differently relative to each other than observed in vision benchmarks, and sometimes perform worse than no adaptation at all. We propose a new simple method which outperforms the existing methods on our new shifts while exhibiting strong performance on a range of vision datasets. Our findings suggest that existing SFDA methods are not as generalizable as previously thought and that considering diverse modalities can be a useful avenue for designing more robust models.

Traditionally, bioacoustics has relied on spectrograms and continuous, per-frame audio representations for the analysis of animal sounds, also serving as input to machine learning models. Meanwhile, the International Phonetic Alphabet (IPA) system has provided an interpretable, language-independent method for transcribing human speech sounds. In this paper, we introduce ISPA (Inter-Species Phonetic Alphabet), a precise, concise, and interpretable system designed for transcribing animal sounds into text. We compare acoustics-based and feature-based methods for transcribing and classifying animal sounds, demonstrating their comparable performance with baseline methods utilizing continuous, dense audio representations. By representing animal sounds with text, we effectively treat them as a "foreign language," and we show that established human language ML paradigms and models, such as language models, can be successfully applied to improve performance.

The use of machine learning (ML) based techniques has become increasingly popular in the field of bioacoustics over the last years. Fundamental requirements for the successful application of ML based techniques are curated, agreed upon, high-quality datasets and benchmark tasks to be learned on a given dataset. However, the field of bioacoustics so far lacks such public benchmarks which cover multiple tasks and species to measure the performance of ML techniques in a controlled and standardized way and that allows for benchmarking newly proposed techniques to existing ones. Here, we propose BEANS (the BEnchmark of ANimal Sounds), a collection of bioacoustics tasks and public datasets, specifically designed to measure the performance of machine learning algorithms in the field of bioacoustics. The benchmark proposed here consists of two common tasks in bioacoustics: classification and detection. It includes 12 datasets covering various species, including birds, land and marine mammals, anurans, and insects. In addition to the datasets, we also present the performance of a set of standard ML methods as the baseline for task performance. The benchmark and baseline code is made publicly available at https://github.com/earthspecies/beans in the hope of establishing a new standard dataset for ML-based bioacoustic research.

Masked token prediction has emerged as a powerful pre-training objective across language, vision, and speech, offering the potential to unify these diverse modalities through a single pre-training task. However, its application for general audio understanding remains underexplored, with BEATs being the only notable example. BEATs has seen limited modifications due to the absence of open-source pre-training code. Furthermore, BEATs was trained only on AudioSet, restricting its broader downstream applicability. To address these gaps, we present OpenBEATs, an open-source framework that extends BEATs via multi-domain audio pre-training. We conduct comprehensive evaluations across six types of tasks, twenty five datasets, and three audio domains, including audio reasoning tasks such as audio question answering, entailment, and captioning. OpenBEATs achieves state-of-the-art performance on six bioacoustics datasets, two environmental sound datasets and five reasoning datasets, performing better than models exceeding a billion parameters at one-fourth their parameter size. These results demonstrate the effectiveness of multi-domain datasets and masked token prediction task to learn general-purpose audio representations. To promote further research and reproducibility, we release all pre-training and evaluation code, pretrained and fine-tuned checkpoints, and training logs at https://shikhar-s.github.io/OpenBEATs

Animal vocalizations contain sequential structures that carry important communicative information, yet most computational bioacoustics studies average the extracted frame-level features across the temporal axis, discarding the order of the sub-units within a vocalization. This paper investigates whether discrete acoustic token sequences, derived through vector quantization and gumbel-softmax vector quantization of extracted self-supervised speech model representations can effectively capture and leverage temporal information. To that end, pairwise distance analysis of token sequences generated from HuBERT embeddings shows that they can discriminate call-types and callers across four bioacoustics datasets. Sequence classification experiments using k-Nearest Neighbour with Levenshtein distance show that the vector-quantized token sequences yield reasonable call-type and caller classification performances, and hold promise as alternative feature representations towards leveraging sequential information in animal vocalizations.

In recent years generative adversarial networks (GANs) have been used to supplement datasets within the field of marine bioacoustics. This is driven by factors such as the cost to collect data, data sparsity and aid preprocessing. One notable challenge with marine bioacoustic data is the low signal-to-noise ratio (SNR) posing difficulty when applying deep learning techniques such as GANs. This work investigates the effect SNR has on the audio-based GAN performance and examines three different evaluation methodologies for GAN performance, yielding interesting results on the effects of SNR on GANs, specifically WaveGAN.