Your browser does not support or is disabling JavaScript.

stamp
MENU
 

EMBO Workshop

From epigenome towards epitranscriptome in cell fate choice

14 – 17 October 2018 | Capri, Italy

  • Abstract Submission
  • 01 April 2018 – 15 June 2018
  • Chosen Participants Will Be Notified By
  • 30 June 2018
  • Travel Grant Application
  • 01 April – 15 June 2018
  • Registration Deadline
  • 31 July 2018

Apply now!

Find us

Tweet #EMBOepitran

Download calendar invitation

poster

Download
poster

About the Workshop

In the central dogma of molecular biology, RNA was thought only to pass genetic information from DNA to protein. Most recent findings strongly indicate that RNA modifications, like mRNA methylation, play dynamic regulatory roles that are analogous to the reversible epigenetic modifications of DNA and histone proteins. Understanding the function and mechanisms of the dynamic RNA modifications, which are termed 'RNA epigenetics', represents a new challenge at the frontier between different disciplines, such as biochemistry, epigenetics and cutting-edge technology.

Reversible RNA modifications add a new dimension to the developing picture of post-transcriptional regulation of gene expression. This new dimension awaits integration with transcriptional regulation, i.e. DNA modifications, to decipher the multi-layered information that controls a plethora of biological functions. Thus, in the era of advanced technologies, the exciting next step is to move from mapping nucleotide modifications to understanding how they contribute to biological processes.

This EMBO Workshop involves sessions dedicated to recent advances in the epigenomic and epitranscriptomic regulation of stem cell pluripotency and differentiation, organismal development, and how their alteration brings about human diseases. Particular emphasis on approaches enabling targeted manipulation of epigenetic marks, which are revolutionising the field, will be addressed.

Topics to be covered include:

1. Dynamic DNA and RNA modifications: Writers, erasers, and readers. This session will be dedicated to the discovery and functional elucidation of the enzymes dynamically modifying and demodifying DNA and RNA molecules. Also, progress made on identification and characterization of proteins mediating the effects of these modifications into biological function will be discussed.

2. Decoding the function of DNA and RNA modifications: Insights from epigenome editing and other approaches. The second session will provide new insights on the emerging approaches useful for an enhanced and more accurate interpretation of DNA and RNA dynamics. For instance, the targeted deposition or removal of chromatin modifications promises to be a powerful tool in basic research, to study gene function and chromatin biology, and also in molecular medicine.

3. DNA and RNA Epigenetics in Stem Cell and Development. This session will discuss the latest advances on the epi-control of the mechanisms underlying the cell fate decision and early developmental processes, with a special focus on the embryonic and adult stem cells. Moreover, DNA and RNA methylation will be discussed in the context of reprogramming events in the developing mouse germ line and zygote.

4. Epigenomes and Epitranscriptomes: A gateway to understanding diseases. In this session, the discussion will be focused on how understanding the regulation of DNA and RNA modifications paves the way towards identifying causes and cures for human diseases, with particular emphasis on cancer, muscle diseases and autoimmune disorders.


About EMBO Courses and Workshops

EMBO Courses and Workshops are selected for their excellent scientific quality and timelines, provision of good networking activities for all participants and speaker gender diversity (at least 40% of speakers must be from the underrepresented gender).

Organisers are encouraged to implement measures to make the meeting environmentally more sustainable.

 

Speakers

Shankar Balasubramanian
Shankar BalasubramanianUniversity of Cambridge,UK,
Adrian Bird
Adrian BirdUniversity of Edinburgh, UK
Déborah Bourch'is
Déborah Bourch'isINSERM U934/CNRS UMR3215, FR
Irene Bozzoni
Irene BozzoniSapienza University of Rome, IT
Victoria Cowling
Victoria CowlingUniversity of Dundee, UK
Luciano Di Croce
Luciano Di CroceCenter for Genomic Regulation, ES
Michaela Frye
Michaela FryeUniversity of Cambridge, UK
Richard Gregory
Richard GregoryHarvard Stem Cell Institute, US
Petra Hajkova
Petra HajkovaImperial College London, UK
Chuan He
Chuan HeThe University of Chicago, US
Rudolf Jaenisch
Rudolf JaenischMassachusetts Institute of Technology, US
Samie Jaffrey
Samie JaffreyCornell University, US
Tony Kouzarides
Tony KouzaridesUniversity of Cambridge, UK
Alex Meissner
Alex MeissnerMax Planck Institute for Molecular Genetics, DE
Yunsun Nam
Yunsun NamHarvard Medical School, US
Mary O’Connel
Mary O’ConnelMasarykova univerzita - CEITEC MU, CZ
Gideon Rechavi
Gideon RechaviTel Aviv University, Ramat Aviv, IL
Wolf Reik
Wolf ReikThe Babraham Institute, Cambridge, UK
Dirk Schubeler
Dirk SchubelerFriedrich Miescher Institute, CH
Hongjun Song
Hongjun SongJohns Hopkins University School of Medicine, US
Henk Stunnenberg
Henk StunnenbergRadboud University, NL
Michiel Vermeulen
Michiel VermeulenRadboud University, NL
Andrew Xiao
Andrew XiaoYale School of Medicine, US
 

Programme

Day 1 | 14 October 2018

14:30-16:30

Guest arrivals/Registration and Poster set up

16:30-16:45

Welcome Address

Antonio Simeone and Tullio Pozzan

16:45-17:30

Plenary Lecture "Graziella Persico" : RNA methylation in gene expression regulation

Chuan He (USA)

17:30-18:00

Coffee Break

Session 1: Dynamic DNA and RNA modifications: writers, readers and erasers

18:00-18:30

Dependence for specific chromatin remodelers defines subsets of mammalian transcription factors

Dirk Schubeler (Switzerland)

18:30-18:45

Short talk: Transcription factors drive Tet2-mediated enhancer demethylation to reprogram cell fate

Jose Luis Sardina (Spain)

18:45-19:15

Modifications of RNA: their function and role in cancer

Tony Kouzarides (UK)

20:30

Dinner

Day 2 | 15 October 2018

Session 1 (continued): Dynamic DNA and RNA modifications: writers readers and erasers

9:00-9:30

Control of mRNA fate by reversible epitranscriptomic nucleotide modifications at internal sites and in mRNA caps

Samie Jaffrey (USA)

9:30-9:45

Short talk: Methylation of structured RNA by the m6A writer METTL16 is essential for mouse embryonic development

Mateusz Mendel (Switzerland)

9:45

Group Photo

10:00-12:00

Coffee Break and Poster session (Odd numbers)

12:00-12:30

Structure and function of RNA methyltransferases

Yunsun Nam (USA)

12:30-13:00

mRNA cap regulation directs cell function and fate

Victoria Cowling (UK)

13:00-13:15

Short talk: Rapid loss of DNMT3A impacts chromatin dynamics during human stem cell differentiation

Raghav Ramabadran (USA)

13:30-14:30

Lunch

15:30-16:00

Interrogating chromatin accessibility and regulatory landscape at single cell resolution

Annika Branting, Regional Marketing Manager 10X Genomics

Session 2: Decoding DNA and RNA modifications: insights from epigenome editing and other approaches

16:00-16:30

Epigenetic regulation in development, aging and disease

Rudolf Jaenisch (USA)

16:30-16:45

Short talk: De-novo DNA methylation: a collective phenomenon

Fabrizio Olmeda (Germany)

16:45-17:15

G-Quadruplex secondary structures and DNA dynamics

Shankar Balasubramanian (UK)

17:15-17.45

Coffee Break

17:45-18:15

Control of gene expression by RNA modifications

Gideon Rechavi (Israel)

18:15-18:30

Short talk: Development of selective chemical probes controlling m6A modification in vivo

Pawel Sledz (Switzerland)

18:30-18:45

Short talk: Epitranscriptomic of dihydrouridine beyond tRNAs

Damien Hermand (Belgium)

18:45-19:15

Reading the epitranscriptome

Michiel Vermeulen (The Netherlands)

19:15-19:30

Short talk: Regulatory modules of RNA methylation in T-cell and mouse ES differentiation

Paulo A. Gameiro (UK)

19:30-20:00

Epigenetic modulation of a preserved 3D chromatin landscape in two distinct states of pluripotency

Henk Stunnemberg (The Netherlands)

20:30

Dinner: Meet the experts I (Speakers of day 1 and 2)

Day 3 | 16 October 2018

Session 3: DNA and RNA Epigenetics in Stem Cell and Development

9:00-9:30

The functions of of DNA N6-MA in mammalian development and human diseases

Andrew Xiao (USA)

9:30-9:45

Short talk: The histone methyltransferase MLL1 in epigenetic regulation of colorectal cancer stem cells

Johanna Grinat (Germany)

9:45-10:15

Epitranscriptomic regulation in the mammalian nervous system

Hongjun Song (USA)

10:15-12:15

Coffee Break and Poster session (Even numbers)

12:15-12:30

Short talk: Genetic dissection of m6A RNA methylation role in early mammalian development

Lior Lasman (Israel)

12:30-13:00

Regulatory potential of cytosine-5 RNA methylation in translation

Michaela Frye (UK)

13:30-14:30

Lunch

16:00-16:30

Epigenetic reprogramming in the mouse germ line

Petra Hajkova (UK)

16:30-17:00

Maternal epigenetic contribution to zygotic genome activation

Debora Bourc’his (France)

17:00-17:15

Short talk: The Transcribed-Ultraconserved lncRNA T-UCstem1: a key molecule in stemness

Emilia Pascale (Italy)

17:15-17:45

Coffee Break

17:45-18:15

Chromatin regulators in cell differentiation and cancer

Luciano Di Croce (Spain)

18:15-18:45

Differential regulation of Oct4 targets facilitates reacquisition of pluripotency

Alex Meissner (Germany)

Session 4: Epigenome and Epitranscriptome: a gateway to understanding disease

18:45-19:15

Role of the m6A ‘Epitranscriptome’ in gene regulation and cancer

Richard Gregory (USA)

19:15-19:30

Short talk: Linking epigenetic DNA/RNA repair mechanisms to cancer

Rosaura Esteve-Puig (Spain)

19:30-20:00

DNA sequence determinants of the Epigenome

Adrian Bird (UK)

20:30

Dinner: Meet the experts II (Speakers of day 3 and 4)

Day 4 | 17 October 2018

Session4 (continued): Epigenome and Epitranscriptome: a gateway to understanding disease

9:00-9:30

Poster Prize Award sponsored by The EMBO Journal

9:30-10:00

Decoding non coding RNA function

Irene Bozzoni (Italy)

10:00-10:30

The many biological roles of ADARs, the RNA editing enzymes

Mary O'Connel (Czech Republic)

10:30-10:45

Short talk: CRISPR-correction of DNMT3B mutations in patient-derived iPSCs as a model to study ICF1 syndrome

Varsha Poondi-Krishnan (Italy)

10:45-11:00

Short talk: The contribution of KHDC3L mutations in maternal methylation landscape to develop recurrent hydatidiform mole

Zahra Anvar (Iran)

11:00-11:45

Closing Lecture: Single cell epigenome landscape of development and ageing

Wolf Reik (UK)

11:45-12:45

Round Table: Past insights and future potential of DNA and RNA Epigenetics

13:00-14:00

Lunch and Departure

 

Registration

  • Abstract Submission
  • 01 April 2018 – 15 June 2018
  • Chosen Participants Will Be Notified By
  • 30 June 2018
  • Travel Grant Application
  • 01 April – 15 June 2018
  • Registration Deadline
  • 31 July 2018

 

  • STUDENT EUR 520
  • ACADEMIC/POSTDOCS EUR 620
  • INDUSTRY EUR 920

Registration includes:

  • Meals (breakfast, lunch, dinner, and coffee break)
  • Full Accommodation
  • Participation in all lectures
  • Workshop material

Payment

Successful participants will receive an email with the payment link.

Selection criteria

The workshop is limited to 120 participants. Selection criteria will be based on:

  • CV
  • Abstract
  • Motivation letter

Abstract guidelines

All applicants are requested to fill out the online application form by submitting an abstract (download the abstract form on the online application page) on their current research and present a poster.

Short oral presentations will be selected from amongst the submitted abstracts. The selected participants for presentations will be notified by 15 September, 2018; posters are therefore not required.

Poster specifications

Poster size must be maximum 90cm width x 110cm height

Due to limited space, posters exceeding the indicated size cannot be displayed.


Travel grants

A limited number of travel grants are available for participants. Applicants do not need to apply separately for travel grants for this event but should indicate on the registration form if they wish to be considered for a travel grant. Selection of awardees is handled directly by the organizer who will notify all eligible participants. More information is available at EMBO Travel Grants' page.

ICGEB grants will also be available for selected participants who are ICGEB Member State nationals, with preference being given to students and junior scientists in the early stage of their career currently residing outside of Italy. Grants will include accommodation, meals and fee waive.

EPIGEN grants will be reserved to young scientists (PhD students and Post-docs) from EPIGEN (Epigenomics Flagship Project) italian laboratories covering the registration fee. Applicants for EPIGEN grants have to fill the relative section in the Online Application page.

InterOmics grants will be reserved for young scientists (PhD students and Post-docs) from InterOmics Flagship Project Italian laboratoris covering the registration fee and the travel costs. Applicants for InterOmics grants will be asked to fill the relative section in the Online Application page.

 

Contact

Anna Maria Aliperti

Email: workshop@igb.cnr.it

Phone: +39 81 6132401

Federica Staempfli

Email: federica.staempfli@igb.cnr.it

Phone: +39 81 6132402

Co-ordinator

Maria Giuseppina Miano
Maria Giuseppina MianoInstitute of Genetics and Biophysics "ABT" - CNR, IT

Organizers

 

Annalisa Fico
Annalisa FicoInstitute of Genetics and Biophysics "ABT" - CNR, IT
Richard Gregory
Richard GregoryHarvard Stem Cell Institute, US
Maria R Matarazzo
Maria R MatarazzoInstitute of Genetics and Biophysics "ABT" - CNR, IT
Wolf Reik
Wolf ReikThe Babraham Institute, UK

 

 
Venue Map

Venue

Hotel La Palma, Capri Naples

Via V. Emanuele 39, 80073 CAPRI (Na) Italy

Ph. +39 081 8370133

Fax +39 081 8376966

Accommodation

Accommodation and meals are provided by the Hotel La Palma, a traditional Capri Hotel located within 2 minutes walking distance from the famous "Piazzetta".

The location has always been highly regarded by past participants because of the intimate, fun, informal environment. Most importantly, it is highly conducive to fostering interactions. In particular, the hotel has wonderful common spaces, including a terrace and a hall that has many sofas and armchairs where many informal scientific discussions have been held.

Participants will be lodged in double rooms; a very limited number of single rooms are available.

Transport

If you arrive at the Naples Capodichino Airport, you can either take a taxi (taxis should display in the car exact fares, avoid taxis that don’t display fares and counter) or take the Airport bus: Alibus ANM—the ticket may be purchased on board (4 Euros) and is valid for 90 minutes for use on all local public transportation — to Piazza Municipio. Buses depart approximately every 30 minutes from 6:00 am to 11:40 pm.

If you arrive at Rome Leonardo da Vinci Airport, take the Fiumicino Express Bus to Naples (Napoli MetroPark) or alternatively take the Airport train to Stazione Termini and then a train to Naples Stazione Centrale. For timetables, please check the link below. From the station, you can either take a taxi or a bus to Piazza Municipio (it takes about 30 minutes).

Hydrofoils and ferry-boats to Capri depart from Molo Beverello, which is in front of Piazza Municipio. Because boats run from 7am to about 6pm (crossing takes about 50 min), you should arrive in Naples no later than 5pm.
 All boats reach the Capri Marina Grande port. From there, take the Cable Railway to Piazza Umberto (the famous Piazzetta) and then take a two minutes walk to the Hotel La Palma (Via Vittorio Emanuele 39, Capri, Tel. +39/081-8370133; Fax +39/081-8376966). The Island can also be reached from Sorrento and Positano.

Useful Links:

Train Info

Naples Airport "Capodichino"

Rome Airport "Leonardo Da Vinci"

Fiumicino Express Bus

Alibus ANM timetable

Hydrofoils and ferry-boats Naples-Capri

About the Area

Hotel La Palma is in the centre of Capri, close to the famous square Umberto I, the “Piazzetta”. It is in the perfect position to reach the incredible sites of the Island: i Giardini di Augusto, Via Krupp, La Certosa and the Faraglioni.

The Piazzetta can be reached from the port by taxi, bus, and funicular railway. For more information of how to get around, see here.

EMBO Journal 2017-10/icgeb_logo.jpg 2017-12/loghi-igb-cnr.jpg 2018-04/logo_nikon_colore_jpg.jpg 2017-10/logo-gjardis.jpg 2017-12/logo-epigen.jpg 2018-04/dsb.jpeg 2018-04/interomics-logo.png 2018-04/mmbiotech.jpg 2018-04/storm_kb2.png 2018-09/2000px-10x_genomics_logo.svg.png 2018-09/epigenomes-logo.png